get some foam or something easily shaped and make a template, then get some fiberglass and compatible resin/hardner and lay it up one layer at a time till its about as thick as the body in that area, trim this to a general fit with a little bit of gap (approx 1/8 better if its 1/16) then use shims and blocks that will be easy to remove and place the new part in its home and get it to set nicely.
now you have to sand the edge of the original body and hole down to bare glass, make it fuzzy for about an inch or so around the hole on both sides, get the new piece in place and start taping (with new glass and resin) around the perimiter of the mating surfaces on the bottom, make sure you get full impregnation of the material and bonding surface. after this kicks all the way you need to spackle the crack that now has a bottom to it full of thickened epoxy using structural high density filler material (u can get this off the shelf or chop some fibers yourself, its all an art form) after the gap is filled repeat the taping procedure on top then sand and fair out the seam you have made and if any gaps or holes show up hit them with tape if they look weak or fill them with high density filler if it seems minor.
with the fitment of the new part make the gap larger if you're going to use hand chopped fibers for filler material, if using store bought high density stuff then make the gap as small as possible and mabey chamfer the edges to make it easier to fill without making a bunch of voids.
if you have a west marine store nearby it will be expensive but the best materials you can get that are also stupid easy to work with are west system products. also when you make a negative template to lay the initial replacement tunnel cover onto be sure, absolutely sure, to use a lot of mold release, make sure that

doesnt bond to the template, the guys at westmarine can help a little especially with things like compatibility of materials.
if you decide to do this i can walk you thru it on here with pics and some phone calls, its easy and like i said artistic, and if you have a fiberglass body this can be a huge skill set to know well to make repairs in the future, you will be much less worried about chunking out a panel on the trail once you get confident with making fg repairs.