The
T-18 Busa suggesting is definitely the top choice if you are desiring a swap to a 4 speed with the low ratio, and are wanting to do the least amount of adaption necessary.
I would venture to guess based on personal experience, it is quite possibly what Busa suggested was the cause as well... The input shaft bearing is most likely the culprit. I had mine go out, (was out actually when i bought it...) and after driving it for a while after the fact, more problems were caused by it.
For me though, 1st and second gear were the noisy ones, and 3rd would quiet it up a bit. Would not completely dis-appear, but would be a lot quieter. When I finally removed it, and had it rebuilt, the input shaft had been damaged, the pilot bushing was toast, the gears were ok inside...
Since you will have, I assume, a lot to do while you have it out, I 2nd this would be a great time for a swap, I still wish I would have done this myself, but was not in the position to do so...