The reason the factory ones work well, despite their chinsy look and thin sides is a couple of things. They are only 3" bolt to bolt which puts less stress on the sides to begin with. But the sides also have the dimples where the rounded ends of the factory rubber bushings go, which adds strength to an otherwise flat piece of metal.
The bolts are also press fit into the one side and welded so it keeps them perpendicular to the side. They also have a shoulder on the threaded end so the other sides gets clamped against it (with the nut) to keep it perpendicular as well. So the assembled shackle stays in a square/rectangular shape.
When you stretch the distance between bolts you add more stress to things via an increase in leverage force. Imagine using a stubby wrench to free a tight bolt vs. a longer wrench. The longer wrench will apply more force. So this is where stronger sides and a center support comes in to play. And if you get off road much the off camber terrain will add much more side or lateral loads to the shackles, acting as a lever which will also want to twist the shackle mounts which are a common failure point on Jeeps. So I always recommend replacing the mounts with a stronger designed aftermarket one if your going with longer shackles.
With all that being said, if your going to make your own I would use 3/8" sides and do as hdgapeach had done and welded a piece of C channel in the center. If welding is not an option you can get some 1"x1", 1/8" wall tubing to bolt through the center. I like square tube better then a round sleeve because it gives it more parallel surface to keep things square. Using bushings that use sleeves inside are even better, as it gives support at the ends as well,plus it keeps the spacing constant and prevents you from over-tightening the bolts and pinching the bushings, which gives a smoother ride and better flex.